STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRH_03930Protein-tyrosine-phosphatase; Protein synonym:phosphotyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (165 aa)    
Predicted Functional Partners:
KRH_03920
Hypothetical protein.
  
 
 0.827
KRH_20870
Hypothetical protein; Belongs to the fructosamine kinase family.
     0.818
KRH_03910
Putative aminotransferase.
  
    0.778
KRH_03940
Putative TetR family transcriptional regulator.
       0.666
trxA
Thioredoxin.
  
 
 0.621
KRH_09910
Hypothetical protein.
  
 
 0.621
trxA-2
Thioredoxin; Belongs to the thioredoxin family.
  
 
 0.621
KRH_00630
Putative arsenite resistance protein.
  
  
 0.608
ybeY
Hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
   0.555
truA
tRNA pseudouridine synthase TruA; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
   
   0.551
Your Current Organism:
Kocuria rhizophila
NCBI taxonomy Id: 378753
Other names: K. rhizophila DC2201, Kocuria rhizophila ATCC 9341, Kocuria rhizophila DC2201, Kocuria rhizophila DSM 348, Kocuria rhizophila NBRC 103217, Kocuria rhizophila str. DC2201, Kocuria rhizophila strain DC2201, Micrococcus luteus ATCC 9341
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