Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KRH_07770 | KRH_07790 | KRH_07770 | KRH_07790 | Putative formate dehydrogenase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | Putative formate dehydrogenase iron-sulfur protein. | 0.999 |
KRH_07770 | KRH_07800 | KRH_07770 | KRH_07800 | Putative formate dehydrogenase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | Hypothetical protein. | 0.972 |
KRH_07770 | selA | KRH_07770 | KRH_07830 | Putative formate dehydrogenase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | Selenocysteine synthase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. | 0.908 |
KRH_07770 | selB | KRH_07770 | KRH_07840 | Putative formate dehydrogenase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | Selenocysteine-specific elongation factor; Protein synonym:SelB translation factor. | 0.907 |
KRH_07770 | selD | KRH_07770 | KRH_07820 | Putative formate dehydrogenase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP. | 0.888 |
KRH_07770 | trxB | KRH_07770 | KRH_23470 | Putative formate dehydrogenase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | Thioredoxin reductase. | 0.458 |
KRH_07790 | KRH_07770 | KRH_07790 | KRH_07770 | Putative formate dehydrogenase iron-sulfur protein. | Putative formate dehydrogenase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.999 |
KRH_07790 | KRH_07800 | KRH_07790 | KRH_07800 | Putative formate dehydrogenase iron-sulfur protein. | Hypothetical protein. | 0.968 |
KRH_07790 | selA | KRH_07790 | KRH_07830 | Putative formate dehydrogenase iron-sulfur protein. | Selenocysteine synthase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. | 0.780 |
KRH_07790 | selB | KRH_07790 | KRH_07840 | Putative formate dehydrogenase iron-sulfur protein. | Selenocysteine-specific elongation factor; Protein synonym:SelB translation factor. | 0.814 |
KRH_07790 | selD | KRH_07790 | KRH_07820 | Putative formate dehydrogenase iron-sulfur protein. | Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP. | 0.694 |
KRH_07800 | KRH_07770 | KRH_07800 | KRH_07770 | Hypothetical protein. | Putative formate dehydrogenase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.972 |
KRH_07800 | KRH_07790 | KRH_07800 | KRH_07790 | Hypothetical protein. | Putative formate dehydrogenase iron-sulfur protein. | 0.968 |
KRH_07800 | selA | KRH_07800 | KRH_07830 | Hypothetical protein. | Selenocysteine synthase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. | 0.719 |
KRH_07800 | selB | KRH_07800 | KRH_07840 | Hypothetical protein. | Selenocysteine-specific elongation factor; Protein synonym:SelB translation factor. | 0.795 |
KRH_07800 | selD | KRH_07800 | KRH_07820 | Hypothetical protein. | Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP. | 0.594 |
dnaA | selD | KRH_00010 | KRH_07820 | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP. | 0.454 |
iscS | iscS-2 | KRH_00420 | KRH_08760 | Cysteine desulfurase. | Cysteine desulfurase. | 0.910 |
iscS | selD | KRH_00420 | KRH_07820 | Cysteine desulfurase. | Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP. | 0.771 |
iscS-2 | iscS | KRH_08760 | KRH_00420 | Cysteine desulfurase. | Cysteine desulfurase. | 0.910 |
page 1 of 3