STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
icdIsocitrate dehydrogenase; Belongs to the monomeric-type IDH family. (737 aa)    
Predicted Functional Partners:
acn
Aconitase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
 
 0.960
sucA
2-oxoglutarate dehydrogenase E1 component; Protein synonym:alpha-ketoglutarate dehydrogenase.
   
 
 0.938
gltB
Glutamate synthase large subunit; Protein synonym:glutamine 2-oxoglutarate aminotransferase.
     
 0.906
purB
Adenylosuccinate lyase.
   
  0.830
gdhA
NADP-dependent glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
 0.826
KRH_08240
7Fe ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
  
  
 0.816
gdh
NAD-dependent glutamate dehydrogenase.
   
 
 0.816
argH
Argininosuccinate lyase.
    
 0.806
KRH_19470
Aldehyde dehydrogenase.
   
 
  0.805
gabD
Succinate-semialdehyde dehydrogenase.
   
 
  0.805
Your Current Organism:
Kocuria rhizophila
NCBI taxonomy Id: 378753
Other names: K. rhizophila DC2201, Kocuria rhizophila ATCC 9341, Kocuria rhizophila DC2201, Kocuria rhizophila DSM 348, Kocuria rhizophila NBRC 103217, Kocuria rhizophila str. DC2201, Kocuria rhizophila strain DC2201, Micrococcus luteus ATCC 9341
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