STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRH_20970Putative TetR family transcriptional regulator. (428 aa)    
Predicted Functional Partners:
KRH_20170
Hypothetical membrane protein.
 
     0.753
fadB
Fatty oxidation complex alpha subunit; Multifunctional protein.
  
  
 0.502
gcdH-3
Putative glutaryl-CoA dehydrogenase.
 
     0.486
KRH_14680
Hypothetical protein.
  
     0.460
KRH_20720
Putative oxidoreductase.
  
     0.437
KRH_20980
Putative peptide ABC transporter peptide-binding protein.
       0.434
KRH_21760
Hypothetical membrane protein.
 
   
 0.406
Your Current Organism:
Kocuria rhizophila
NCBI taxonomy Id: 378753
Other names: K. rhizophila DC2201, Kocuria rhizophila ATCC 9341, Kocuria rhizophila DC2201, Kocuria rhizophila DSM 348, Kocuria rhizophila NBRC 103217, Kocuria rhizophila str. DC2201, Kocuria rhizophila strain DC2201, Micrococcus luteus ATCC 9341
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.