STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001570625_01611Unannotated protein. (111 aa)    
Predicted Functional Partners:
GCA_001570625_01612
Unannotated protein.
 
 
   0.969
GCA_001570625_00970
Unannotated protein.
 
 
   0.866
DDZ44_00635
Unannotated protein.
  
     0.774
GCA_001570625_02555
Unannotated protein.
  
 
   0.752
DDZ44_05250
Unannotated protein.
  
 
   0.743
GCA_001570625_00770
Unannotated protein.
  
     0.737
DDZ44_10005
Unannotated protein.
  
 
   0.673
GCA_001570625_01498
Unannotated protein.
  
 
   0.560
GCA_001570625_00956
Unannotated protein.
  
     0.558
DDZ44_06550
Unannotated protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
     0.497
Your Current Organism:
Syntrophomonas wolfei methylbutyratica
NCBI taxonomy Id: 378794
Other names: CGMCC 1.5051, JCM 14075, S. wolfei subsp. methylbutyratica, Syntrophomonas wolfei subsp. methylbutyratica, strain 4J5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.