STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDZ44_07620Unannotated protein; Belongs to the UPF0297 family. (90 aa)    
Predicted Functional Partners:
DDZ44_07625
Unannotated protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
  
    0.954
DDZ44_07630
Unannotated protein; Belongs to the UPF0473 family.
  
  
 0.842
GCA_001570625_00628
Unannotated protein.
  
     0.767
DDZ44_12060
Unannotated protein.
  
     0.760
DDZ44_07615
Unannotated protein; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.739
DDZ44_05940
Unannotated protein.
  
     0.718
GCA_001570625_00404
Unannotated protein.
  
     0.705
DDZ44_10375
Unannotated protein.
  
  
 0.673
DDZ44_04460
Unannotated protein.
  
     0.638
DDZ44_04225
Unannotated protein.
  
     0.636
Your Current Organism:
Syntrophomonas wolfei methylbutyratica
NCBI taxonomy Id: 378794
Other names: CGMCC 1.5051, JCM 14075, S. wolfei subsp. methylbutyratica, Syntrophomonas wolfei subsp. methylbutyratica, strain 4J5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.