Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
livGBranched chain amino acid ABC transporter, ATP-binding protein. (294 aa)    
Predicted Functional Partners:
livH
Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.999
ADO69040.1
Branched chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
ADO69038.1
Branched chain amino acid ABC transporter, periplasmic amino acid-binding protein.
 
 
 0.997
ADO69042.1
Branched-chain amino acid ABC transporter, ATP-binding protein.
 
 
0.997
ADO69571.1
Receptor family ligand-binding protein.
 
 
 0.991
ADO69692.1
Receptor family ligand-binding protein.
 
 
 0.978
ADO75285.1
Conserved uncharacterized protein.
 
  
 0.888
ADO72396.1
Cytochrome c.
 
  
 0.671
ADO74265.1
Conserved uncharacterized protein.
  
  
 0.591
ADO75445.1
Uncharacterized protein.
  
  
 0.591
Your Current Organism:
Stigmatella aurantiaca
NCBI taxonomy Id: 378806
Other names: S. aurantiaca DW4/3-1, Stigmatella aurantiaca DW4/3-1, Stigmatella aurantiaca str. DW4/3-1, Stigmatella aurantiaca strain DW4/3-1
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