STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaGProtocatechuate 3,4-dioxygenase, alpha subunit. (185 aa)    
Predicted Functional Partners:
pcaH-2
Protocatechuate 3,4-dioxygenase, beta subunit.
 
0.999
pcaB
3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.993
pobA
4-hydroxybenzoate 3-monooxygenase.
 
  
 0.985
pcaCD
3-Oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase.
 
  
 0.929
gctA
Glutaconate CoA-transferase, subunit A.
 
  
 0.926
gctB
3-oxoadipate CoA-transferase subunit B.
 
  
 0.917
pcaR
Transcriptional regulator.
 
  
 0.893
pcaF
Beta-ketoadipyl CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
 
  
 0.830
pcaK
4-hydroxybenzoate transporter.
 
    0.612
ADO75914.1
Glutaconate CoA-transferase family, subunit B.
 
  
 0.452
Your Current Organism:
Stigmatella aurantiaca
NCBI taxonomy Id: 378806
Other names: S. aurantiaca DW4/3-1, Stigmatella aurantiaca DW4/3-1, Stigmatella aurantiaca str. DW4/3-1, Stigmatella aurantiaca strain DW4/3-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.