STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADO71930.1Cupin 4 family protein. (383 aa)    
Predicted Functional Partners:
ADO71929.1
Cupin 4 family protein.
 
    
0.797
ADO71931.1
Lanthionine synthetase C family protein.
       0.781
ADO71927.1
Phytanoyl-CoA dioxygenase.
 
     0.765
ADO71932.1
Conserved uncharacterized protein.
       0.752
ADO71928.1
Phytanoyl-CoA dioxygenase family protein.
 
     0.739
ADO71933.1
Geranylgeranyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
    0.626
ADO71925.1
Uncharacterized protein.
       0.618
ADO71926.1
Squalene-hopene cyclase.
       0.618
ADO71934.1
Radical SAM domain protein.
       0.614
rplP
50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
    
 
 0.567
Your Current Organism:
Stigmatella aurantiaca
NCBI taxonomy Id: 378806
Other names: S. aurantiaca DW4/3-1, Stigmatella aurantiaca DW4/3-1, Stigmatella aurantiaca str. DW4/3-1, Stigmatella aurantiaca strain DW4/3-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.