Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADO72570.1General secretory system II protein E. (590 aa)    
Predicted Functional Partners:
pilC
Type IV pilin.
 
 
 0.815
ADO73218.1
General secretion pathway protein E, N-terminal domain protein.
  
     0.768
ADO72328.1
General secretion pathway protein E, N-terminal domain protein.
  
     0.767
ADO73217.1
General secretion pathway protein E, N-terminal domain protein.
  
     0.767
gspE
General secretion protein E.
  
     0.764
ADO74150.1
General secretory system II, protein E.
  
     0.757
gspF
General secretion pathway protein F.
 
 
 0.756
pilM
PilM protein (type IV pilus biogenesis protein).
 
 
 
 0.746
ADO69260.1
General secretory system II, protein E-like protein.
  
     0.743
ADO74206.1
Type IV pilus subunit.
 
 
 0.696
Your Current Organism:
Stigmatella aurantiaca
NCBI taxonomy Id: 378806
Other names: S. aurantiaca DW4/3-1, Stigmatella aurantiaca DW4/3-1, Stigmatella aurantiaca str. DW4/3-1, Stigmatella aurantiaca strain DW4/3-1
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