STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAU_0051Putative aminotransferase. (402 aa)    
Predicted Functional Partners:
tyrA
Chorismate mutase/prephenate dehydrogenase; Bifunctional protein; protein synonym: CM; protein synonym: PDH; protein synonym: T-protein.
    
 0.946
GAU_0558
Methylenetetrahydrofolate reductase family protein.
    
 0.936
GAU_2123
4-hydroxyphenylpyruvate dioxygenase; Protein synonym: 4HPPD; protein synonym: HPD; protein synonym: HPPDase.
  
 
 0.932
pheA
Prephenate dehydratase; Protein synonym: PDT.
    
 0.931
GAU_0144
Hypothetical protein.
 
  
  0.918
GAU_3800
Aminotransferase.
   
 
 0.918
metH
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.915
aspC
Aspartate aminotransferase.
   
 0.915
GAU_2719
Putative D-alanine aminotransferase.
     
 0.915
GAU_3126
Aminotransferase.
   
 0.915
Your Current Organism:
Gemmatimonas aurantiaca
NCBI taxonomy Id: 379066
Other names: G. aurantiaca T-27, Gemmatimonas aurantiaca DSM 14586, Gemmatimonas aurantiaca JCM 11422, Gemmatimonas aurantiaca NBRC 100505, Gemmatimonas aurantiaca T-27, Gemmatimonas aurantiaca str. T-27, Gemmatimonas aurantiaca strain T-27
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