STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAU_0163Glutamate carboxypeptidase II. (723 aa)    
Predicted Functional Partners:
GAU_0164
Hypothetical protein.
       0.723
GAU_0165
Putative esterase.
       0.622
GAU_0162
Hypothetical protein.
       0.565
GAU_0161
Putative phosphatase.
 
     0.543
GAU_0787
Hypothetical protein.
  
 
  0.543
indO
Protein synonym: IDO; protein synonym: indoleamine-pyrrole 2,3-dioxygenase.
  
  
  0.531
GAU_3421
Hypothetical protein.
  
     0.499
GAU_1909
ATPase.
 
    0.445
GAU_3156
Hypothetical protein.
  
     0.416
GAU_3303
Hypothetical protein.
  
     0.402
Your Current Organism:
Gemmatimonas aurantiaca
NCBI taxonomy Id: 379066
Other names: G. aurantiaca T-27, Gemmatimonas aurantiaca DSM 14586, Gemmatimonas aurantiaca JCM 11422, Gemmatimonas aurantiaca NBRC 100505, Gemmatimonas aurantiaca T-27, Gemmatimonas aurantiaca str. T-27, Gemmatimonas aurantiaca strain T-27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.