STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
serAD-3-phosphoglycerate dehydrogenase; Protein synonym: PGDH; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (534 aa)    
Predicted Functional Partners:
GAU_0193
Hypothetical protein.
 
 0.984
gpm
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
     
 0.903
GAU_0192
Transaminase.
 
  
 0.835
GAU_0194
FAD linked oxidase.
  
  
 0.786
GAU_0558
Methylenetetrahydrofolate reductase family protein.
   
 
 0.777
udk
Uridine kinase; Protein synonym: cytidine monophosphokinase; protein synonym: uridine monophosphokinase.
   
  0.725
GAU_1367
Aspartokinase/homoserine dehydrogenase; Bifunctional protein; protein synonym: AKI-HDI.
  
 
 0.678
GAU_0191
Hypothetical protein.
       0.579
metX/hom
Homoserine O-acetyltransferase/homoserine dehydrogenase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the AB hydrolase superfamily. MetX family.
 
 
 0.562
nadE
NH(3)-dependent NAD (+) synthetase.
 
   
 0.534
Your Current Organism:
Gemmatimonas aurantiaca
NCBI taxonomy Id: 379066
Other names: G. aurantiaca T-27, Gemmatimonas aurantiaca DSM 14586, Gemmatimonas aurantiaca JCM 11422, Gemmatimonas aurantiaca NBRC 100505, Gemmatimonas aurantiaca T-27, Gemmatimonas aurantiaca str. T-27, Gemmatimonas aurantiaca strain T-27
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.