STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAU_0197Fis family transcriptional regulator. (418 aa)    
Predicted Functional Partners:
rpoN
RNA polymerase sigma factor.
 
   
 0.782
GAU_0196
Hypothetical protein.
       0.605
GAU_0767
Putative two-component hybrid sensor and regulator.
  
 
 0.528
cheA-2
Putative chemotaxis protein CheA.
  
 
 0.519
GAU_1000
Putative two-component hybrid sensor and regulator.
  
 
 0.514
GAU_0198
Hypothetical protein.
       0.491
GAU_0194
FAD linked oxidase.
 
     0.474
fliM
Flagellar motor switch protein FliM.
  
  
 0.449
GAU_0200
Two-component histidine kinase.
 
 
 
 0.448
GAU_1544
Two-component histidine kinase.
 
 
 0.441
Your Current Organism:
Gemmatimonas aurantiaca
NCBI taxonomy Id: 379066
Other names: G. aurantiaca T-27, Gemmatimonas aurantiaca DSM 14586, Gemmatimonas aurantiaca JCM 11422, Gemmatimonas aurantiaca NBRC 100505, Gemmatimonas aurantiaca T-27, Gemmatimonas aurantiaca str. T-27, Gemmatimonas aurantiaca strain T-27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.