STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAU_0270Putative ABC transporter ATP-binding protein. (308 aa)    
Predicted Functional Partners:
GAU_0271
Hypothetical membrane protein.
 
 
 0.966
GAU_0269
Hypothetical protein.
 
 
 0.965
GAU_0378
Putative ABC transporter permease protein.
 
  
 0.930
GAU_0711
Putative ABC transporter ATP-binding protein.
    
0.909
GAU_3078
Putative ABC transporter ATP-binding protein.
 
    
0.884
GAU_0268
Putative ABC transporter ATP-binding protein.
 
    
0.819
GAU_3489
Putative ABC transporter ATP-binding protein.
 
    
0.782
GAU_0059
Putative ABC transporter ATP-binding protein.
 
    
0.763
lolD
Lipoprotein releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
     0.642
paaE
Phenylacetic acid degradation NADH oxidoreductase.
     
 0.553
Your Current Organism:
Gemmatimonas aurantiaca
NCBI taxonomy Id: 379066
Other names: G. aurantiaca T-27, Gemmatimonas aurantiaca DSM 14586, Gemmatimonas aurantiaca JCM 11422, Gemmatimonas aurantiaca NBRC 100505, Gemmatimonas aurantiaca T-27, Gemmatimonas aurantiaca str. T-27, Gemmatimonas aurantiaca strain T-27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.