STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hypD[NiFe] hydrogenase expression/formation protein HypD. (371 aa)    
Predicted Functional Partners:
hypE
Hydrogenase expression/formation protein HypE.
 
 0.999
hypC
[NiFe] hydrogenase expression/formation protein HypC.
 
 
 0.999
hypB
Hydrogenase isoenzymes nickel incorporation protein HypB.
 
  
 0.975
GAU_0412
NiFe uptake hydrogenase large subunit.
 
 
 0.924
hypF
Hydrogenase maturation protein HypF.
 
  
 0.908
hypA
Putative hydrogenase nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
  
 0.903
GAU_0411
Hydrogenase maturation protease.
 
   
 0.859
GAU_0410
Hypothetical protein.
     
 0.822
GAU_0413
NiFe uptake hydrogenase small subunit.
 
  
 0.813
GAU_0407
Hypothetical protein.
     
 0.811
Your Current Organism:
Gemmatimonas aurantiaca
NCBI taxonomy Id: 379066
Other names: G. aurantiaca T-27, Gemmatimonas aurantiaca DSM 14586, Gemmatimonas aurantiaca JCM 11422, Gemmatimonas aurantiaca NBRC 100505, Gemmatimonas aurantiaca T-27, Gemmatimonas aurantiaca str. T-27, Gemmatimonas aurantiaca strain T-27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.