STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAU_0421Hypothetical protein. (283 aa)    
Predicted Functional Partners:
GAU_1367
Aspartokinase/homoserine dehydrogenase; Bifunctional protein; protein synonym: AKI-HDI.
  
  
 0.849
ilvD
Dihydroxy-acid dehydratase; Protein synonym: DAD; Belongs to the IlvD/Edd family.
  
  
 0.800
ilvD-2
Dihydroxy-acid dehydratase; Protein synonym: DAD; Belongs to the IlvD/Edd family.
  
  
 0.800
GAU_3099
Hypothetical protein.
 
     0.728
idh
NADP-dependent isocitrate dehydrogenase; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
   
 
 0.689
paaZ
Phenylacetic acid degradation protein.
  
 0.642
gltB
Protein synonym: GLTS alpha chain; protein synonym: glutamate synthase alpha subunit.
  
  
 0.631
metX/hom
Homoserine O-acetyltransferase/homoserine dehydrogenase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the AB hydrolase superfamily. MetX family.
  
  
 0.608
GAU_1526
Hypothetical protein.
 
     0.597
GAU_2719
Putative D-alanine aminotransferase.
  
 
 0.591
Your Current Organism:
Gemmatimonas aurantiaca
NCBI taxonomy Id: 379066
Other names: G. aurantiaca T-27, Gemmatimonas aurantiaca DSM 14586, Gemmatimonas aurantiaca JCM 11422, Gemmatimonas aurantiaca NBRC 100505, Gemmatimonas aurantiaca T-27, Gemmatimonas aurantiaca str. T-27, Gemmatimonas aurantiaca strain T-27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.