GAU_0758 protein (Gemmatimonas aurantiaca) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GAU_0758

Putative peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (340 aa)

Predicted Functional Partners:

GAU_0759

0.998

GAU_0641

0.995

GAU_2045

0.995

GAU_0760

0.993

GAU_1031

0.992

GAU_0606

0.987

GAU_2044

0.981

GAU_0757

0.972

GAU_1032

0.955

GAU_0761

0.950

Your Current Organism:

Gemmatimonas aurantiaca

NCBI taxonomy Id: 379066
Other names: G. aurantiaca T-27, Gemmatimonas aurantiaca DSM 14586, Gemmatimonas aurantiaca JCM 11422, Gemmatimonas aurantiaca NBRC 100505, Gemmatimonas aurantiaca T-27, Gemmatimonas aurantiaca str. T-27, Gemmatimonas aurantiaca strain T-27

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GAU_0606	GAU_0641	Putative ABC transporter permease protein.	Putative peptide ABC transporter permease protein.	0.976
GAU_0606	GAU_0757	Putative ABC transporter permease protein.	Putative peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.909
GAU_0606	GAU_0758	Putative ABC transporter permease protein.	Putative peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.987
GAU_0606	GAU_0759	Putative ABC transporter permease protein.	Putative peptide ABC transporter permease protein.	0.930
GAU_0606	GAU_0761	Putative ABC transporter permease protein.	Putative peptide ABC transporter substrate binding protein.	0.850
GAU_0606	GAU_1031	Putative ABC transporter permease protein.	Putative ABC transporter permease protein.	0.888
GAU_0606	GAU_2045	Putative ABC transporter permease protein.	Putative peptide ABC transporter permease protein.	0.940
GAU_0641	GAU_0606	Putative peptide ABC transporter permease protein.	Putative ABC transporter permease protein.	0.976
GAU_0641	GAU_0757	Putative peptide ABC transporter permease protein.	Putative peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.988
GAU_0641	GAU_0758	Putative peptide ABC transporter permease protein.	Putative peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.995
GAU_0641	GAU_0760	Putative peptide ABC transporter permease protein.	Putative peptide ABC transporter permease protein.	0.917
GAU_0641	GAU_0761	Putative peptide ABC transporter permease protein.	Putative peptide ABC transporter substrate binding protein.	0.849
GAU_0641	GAU_1032	Putative peptide ABC transporter permease protein.	Putative ABC transporter permease protein.	0.883
GAU_0641	GAU_2044	Putative peptide ABC transporter permease protein.	Putative peptide ABC transporter permease protein.	0.933
GAU_0757	GAU_0606	Putative peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Putative ABC transporter permease protein.	0.909
GAU_0757	GAU_0641	Putative peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Putative peptide ABC transporter permease protein.	0.988
GAU_0757	GAU_0758	Putative peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Putative peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.972
GAU_0757	GAU_0759	Putative peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Putative peptide ABC transporter permease protein.	0.997
GAU_0757	GAU_0760	Putative peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Putative peptide ABC transporter permease protein.	0.977
GAU_0757	GAU_0761	Putative peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Putative peptide ABC transporter substrate binding protein.	0.925

page 1 of 5

Network Stats

number of nodes:

11

number of edges:

20

average node degree:

3.64

avg. local clustering coefficient:

0.781

expected number of edges:

12

PPI enrichment p-value:

0.0158

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006261

DNA-templated DNA replication

3 of 17

1.98

1.43

0.0036

GO:0006259

DNA metabolic process

5 of 159

1.23

0.99

0.0036

GO:0006269

DNA replication, synthesis of RNA primer

2 of 8

2.13

0.96

0.0282

GO:0090304

Nucleic acid metabolic process

6 of 342

0.98

0.77

0.0036

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0140097

Catalytic activity, acting on DNA

4 of 82

1.42

1.07

0.0057

GO:0003677

DNA binding

5 of 320

0.93

0.57

0.0284

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:1990077

Primosome complex

3 of 10

2.21

2.26

0.00015

GO:0005576

Extracellular region

2 of 30

1.56

0.89

0.0237

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:7184

DNA replication protein DnaC/insertion sequence putative ATP-binding protein, and DNA strand exchange activity

3 of 5

2.51

2.3

0.00019

CL:752

DNA damage, and DNA replication

3 of 48

1.53

0.99

0.0133

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

dml03030

DNA replication

2 of 14

1.89

0.86

0.0366

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:1990077

Primosome complex

3 of 20

1.91

1.54

0.0020

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About