Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAU_0803Hypothetical protein. (879 aa)    
Predicted Functional Partners:
GAU_3817
Hypothetical protein.
  
     0.709
GAU_3117
Hypothetical protein.
  
     0.705
GAU_3595
Hypothetical protein.
  
     0.683
GAU_0910
Hypothetical protein.
  
     0.668
GAU_2341
Hypothetical protein.
  
     0.668
GAU_2336
Hypothetical protein.
  
     0.618
GAU_3218
seryl-AMP ligase; Protein synonym: serine activating enzyme; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.602
GAU_0802
Hypothetical protein.
       0.509
GAU_0052
Hypothetical protein.
  
     0.505
GAU_0638
Putative response regulator.
  
     0.461
Your Current Organism:
Gemmatimonas aurantiaca
NCBI taxonomy Id: 379066
Other names: G. aurantiaca T-27, Gemmatimonas aurantiaca DSM 14586, Gemmatimonas aurantiaca JCM 11422, Gemmatimonas aurantiaca NBRC 100505, Gemmatimonas aurantiaca T-27, Gemmatimonas aurantiaca str. T-27, Gemmatimonas aurantiaca strain T-27
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