Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAU_0807Hypothetical protein. (319 aa)    
Predicted Functional Partners:
GAU_0806
ArsR family transcriptional regulator.
 
    0.934
GAU_3467
ArsR family transcriptional regulator.
  
    0.624
GAU_0805
AraC family transcriptional regulator.
 
     0.598
GAU_0081
ArsR family transcriptional regulator.
  
    0.591
GAU_2930
ArsR family transcriptional regulator.
  
    0.528
GAU_3617
Hypothetical protein.
 
     0.461
GAU_2181
Outer membrane efflux protein.
  
     0.455
GAU_1319
Hypothetical protein.
  
     0.419
Your Current Organism:
Gemmatimonas aurantiaca
NCBI taxonomy Id: 379066
Other names: G. aurantiaca T-27, Gemmatimonas aurantiaca DSM 14586, Gemmatimonas aurantiaca JCM 11422, Gemmatimonas aurantiaca NBRC 100505, Gemmatimonas aurantiaca T-27, Gemmatimonas aurantiaca str. T-27, Gemmatimonas aurantiaca strain T-27
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