STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAU_1192Hypothetical protein. (252 aa)    
Predicted Functional Partners:
GAU_1193
Hypothetical protein.
      0.873
GAU_1191
Phospho-2-dehydro-3-deoxyheptonate aldolase; Protein synonym: 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase; protein synonym: DAHP synthetase; protein synonym: DAHPS; protein synonym: phospho-2-keto-3-deoxyheptonate aldolase.
       0.776
GAU_1196
Hypothetical protein.
       0.730
smc
Chromosome segregation protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.
  
    0.727
GAU_1195
Hypothetical protein.
       0.725
lolA
Outer-membrane lipoprotein carrier protein precursor.
 
     0.710
GAU_1197
Sigma factor, ECF-like family protein; Belongs to the sigma-70 factor family. ECF subfamily.
       0.533
Your Current Organism:
Gemmatimonas aurantiaca
NCBI taxonomy Id: 379066
Other names: G. aurantiaca T-27, Gemmatimonas aurantiaca DSM 14586, Gemmatimonas aurantiaca JCM 11422, Gemmatimonas aurantiaca NBRC 100505, Gemmatimonas aurantiaca T-27, Gemmatimonas aurantiaca str. T-27, Gemmatimonas aurantiaca strain T-27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.