STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tadAPutative deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (144 aa)    
Predicted Functional Partners:
hisI
phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase; Bifunctional protein; protein synonym: histidine biosynthesis bifunctional protein HisIE; In the N-terminal section; belongs to the PRA-CH family.
   
  
 0.953
GAU_2718
Protein synonym: LD-carboxypeptidase A.
      0.784
exoA
Exodeoxyribonuclease III.
   
 
 0.699
GAU_1493
Hypothetical protein.
       0.623
tdk
Thymidine kinase.
    
 0.618
GAU_1534
biotin--[acetyl-CoA-carboxylase] ligase.
  
    0.603
GAU_2900
Alcohol dehydrogenase.
  
    0.602
udk
Uridine kinase; Protein synonym: cytidine monophosphokinase; protein synonym: uridine monophosphokinase.
  
 
 0.583
GAU_1950
Peptidase M22 family protein.
 
  
 0.556
GAU_0558
Methylenetetrahydrofolate reductase family protein.
  
  
 0.547
Your Current Organism:
Gemmatimonas aurantiaca
NCBI taxonomy Id: 379066
Other names: G. aurantiaca T-27, Gemmatimonas aurantiaca DSM 14586, Gemmatimonas aurantiaca JCM 11422, Gemmatimonas aurantiaca NBRC 100505, Gemmatimonas aurantiaca T-27, Gemmatimonas aurantiaca str. T-27, Gemmatimonas aurantiaca strain T-27
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