STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAU_1759Hypothetical membrane protein. (170 aa)    
Predicted Functional Partners:
GAU_1760
Rod shape-determining protein.
       0.777
mrdA
Protein synonym: PBP-2.
       0.771
mrdB
Rod shape determining protein; Belongs to the SEDS family.
       0.750
mreB
Rod shape-determining protein MreB.
       0.746
accD
acetyl-CoA carboxylase carboxyl transferase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
       0.536
GAU_1762
Alanine dehydrogenase; Belongs to the AlaDH/PNT family.
       0.427
proS
prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).
       0.414
hisS
histidyl-tRNA synthetase; Protein synonym: HisRS; protein synonym: histidine--tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.414
folC
Folylpolyglutamate synthase; Protein synonym: FPGS; protein synonym: folylpoly-gamma-glutamate synthetase; protein synonym: tetrahydrofolylpolyglutamate synthase.
       0.414
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
       0.407
Your Current Organism:
Gemmatimonas aurantiaca
NCBI taxonomy Id: 379066
Other names: G. aurantiaca T-27, Gemmatimonas aurantiaca DSM 14586, Gemmatimonas aurantiaca JCM 11422, Gemmatimonas aurantiaca NBRC 100505, Gemmatimonas aurantiaca T-27, Gemmatimonas aurantiaca str. T-27, Gemmatimonas aurantiaca strain T-27
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