STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
dapBDihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. (243 aa)    
Predicted Functional Partners:
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
 
 
 0.996
dapD
Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Protein synonym: THP succinyltransferase; protein synonym: tetrahydrodipicolinate N-succinyltransferase; protein synonym: tetrahydropicolinate succinylase; Belongs to the transferase hexapeptide repeat family.
 
 
 0.992
asd
Protein synonym: ASA dehydrogenase; protein synonym: ASADH; Belongs to the aspartate-semialdehyde dehydrogenase family.
 
  
 0.948
GAU_1794
Aspartokinase; Protein synonym: lysine-sensitive aspartokinase III; Belongs to the aspartokinase family.
 
  
 0.946
GAU_2121
Aminotransferase.
 
  
 0.923
GAU_0926
Putative aminotransferase.
    
 0.908
GAU_0904
Putative dihydrodipicolinate synthetase; Belongs to the DapA family.
 
  
 0.869
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
 
  
 0.844
GAU_1911
tRNA nucleotidyltransferase.
  
    0.828
GAU_1796
Peptidase M20A family protein.
  
 
 0.805
Your Current Organism:
Gemmatimonas aurantiaca
NCBI taxonomy Id: 379066
Other names: G. aurantiaca T-27, Gemmatimonas aurantiaca DSM 14586, Gemmatimonas aurantiaca JCM 11422, Gemmatimonas aurantiaca NBRC 100505, Gemmatimonas aurantiaca T-27, Gemmatimonas aurantiaca str. T-27, Gemmatimonas aurantiaca strain T-27
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