STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmdGDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. (321 aa)    
Predicted Functional Partners:
GAU_1969
Putative GDP-6-deoxy-D-lyxo-4-hexulose reductase.
 
  
 
0.980
GAU_3584
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Bifunctional protein.
 
 
 0.943
manC
Putative mannose-1-phosphate guanylyltransferase; Bifunctional protein; protein synonym: GDP-mannose pyrophosphorylase.
 
 
 0.942
carB
Protein synonym: carbamoyl-phosphate synthetase ammonia chain.
       0.750
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
 
  
   0.738
GAU_0585
Putative glycosyltransferase.
  
  
 0.723
GAU_0579
Putative exopolysaccharide biosynthesis protein.
  
  
 0.621
GAU_1967
Putative acetyltransferase.
     
 0.614
rplD
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.
 
      0.585
GAU_1966
Putative oxidoreductase.
       0.572
Your Current Organism:
Gemmatimonas aurantiaca
NCBI taxonomy Id: 379066
Other names: G. aurantiaca T-27, Gemmatimonas aurantiaca DSM 14586, Gemmatimonas aurantiaca JCM 11422, Gemmatimonas aurantiaca NBRC 100505, Gemmatimonas aurantiaca T-27, Gemmatimonas aurantiaca str. T-27, Gemmatimonas aurantiaca strain T-27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.