STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crtIProtein synonym: phytoene desaturase. (487 aa)    
Predicted Functional Partners:
pys
Phytoene synthase.
 
 0.999
GAU_2407
Hypothetical membrane protein.
     
 0.822
GAU_0461
Protein synonym: FPP--FPP farnesyltransferase; protein synonym: SQS; protein synonym: SS; protein synonym: squalene synthetase.
 
  
 0.818
GAU_2405
Hypothetical protein.
       0.705
GAU_2404
Putative outer membrane protein.
       0.681
GAU_3106
Hypothetical protein.
  
     0.479
GAU_2587
Putative oxidoreductase.
 
  
 0.465
GAU_3324
Putative tryptophan-rich sensory protein.
 
  
 0.439
chlI
Protein synonym: protoporphyrin IX magnesium-chelatase.
  
  
 0.433
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
       0.417
Your Current Organism:
Gemmatimonas aurantiaca
NCBI taxonomy Id: 379066
Other names: G. aurantiaca T-27, Gemmatimonas aurantiaca DSM 14586, Gemmatimonas aurantiaca JCM 11422, Gemmatimonas aurantiaca NBRC 100505, Gemmatimonas aurantiaca T-27, Gemmatimonas aurantiaca str. T-27, Gemmatimonas aurantiaca strain T-27
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.