STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilBType IV pilus assembly protein PilB. (634 aa)    
Predicted Functional Partners:
pilC
Type IV pilus assembly protein PilC.
 
 0.979
gspF
General secretion pathway protein F.
 
 0.965
pilM
Putative type IV pilus assembly protein PilM.
 
 
 0.891
pilD
Leader peptidase/N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.883
GAU_2517
Hypothetical protein.
  
 
 0.761
GAU_2075
Putative general secretion pathway protein G.
 
 
 0.750
pilT-3
Twitching mobility protein.
 
  
0.695
GAU_0732
Hypothetical protein.
  
 
 0.634
GAU_1100
Hypothetical protein.
  
 
 0.634
GAU_2576
Putative S23 ribosomal protein.
  
 
 0.634
Your Current Organism:
Gemmatimonas aurantiaca
NCBI taxonomy Id: 379066
Other names: G. aurantiaca T-27, Gemmatimonas aurantiaca DSM 14586, Gemmatimonas aurantiaca JCM 11422, Gemmatimonas aurantiaca NBRC 100505, Gemmatimonas aurantiaca T-27, Gemmatimonas aurantiaca str. T-27, Gemmatimonas aurantiaca strain T-27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.