STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glpFGlycerol uptake facilitator protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (245 aa)    
Predicted Functional Partners:
GAU_2858
Glycerol-3-phosphate dehydrogenase.
 
  
 0.934
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
 
 0.908
indO
Protein synonym: IDO; protein synonym: indoleamine-pyrrole 2,3-dioxygenase.
   
 
 0.788
aspA
Aspartate ammonia-lyase; Protein synonym: aspartase.
  
 0.547
ndk
Nucleoside diphosphate kinase; Protein synonym: NDK; protein synonym: NDP kinase; protein synonym: nucleoside-2-P kinase; Belongs to the NDK family.
  
 
 0.537
GAU_1183
Crp family transcriptional regulator.
   
 0.531
GAU_3045
Hypothetical protein.
     
 0.504
GAU_3230
Putative thiol-specific antioxidant protein.
   
 
 0.443
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
  
 0.412
GAU_1696
Glycerophosphoryl diester phosphodiesterase family protein.
  
 
 0.404
Your Current Organism:
Gemmatimonas aurantiaca
NCBI taxonomy Id: 379066
Other names: G. aurantiaca T-27, Gemmatimonas aurantiaca DSM 14586, Gemmatimonas aurantiaca JCM 11422, Gemmatimonas aurantiaca NBRC 100505, Gemmatimonas aurantiaca T-27, Gemmatimonas aurantiaca str. T-27, Gemmatimonas aurantiaca strain T-27
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.