STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ilvD-2Dihydroxy-acid dehydratase; Protein synonym: DAD; Belongs to the IlvD/Edd family. (562 aa)    
Predicted Functional Partners:
ilvE
Branched-chain amino-acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
  
 0.973
GAU_1293
Leucine dehydrogenase; Protein synonym: LeuDH; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 0.913
ilvD
Dihydroxy-acid dehydratase; Protein synonym: DAD; Belongs to the IlvD/Edd family.
  
  
 
0.903
gltB
Protein synonym: GLTS alpha chain; protein synonym: glutamate synthase alpha subunit.
  
  
 0.896
GAU_3552
Tartrate dehydrogenase/tartrate decarboxylase/D-malate dehydrogenase; Multifunctional protein.
 
  
 0.861
icd
Isocitrate dehydrogenase; Protein synonym: IDH; protein synonym: NADP(+)-specific ICDH; protein synonym: oxalosuccinate decarboxylase.
 
  
 0.809
GAU_0421
Hypothetical protein.
  
  
 0.800
GAU_3187
Oxidoreductase.
     
 0.775
GAU_3188
NADP-dependent dehydrogenase.
       0.775
GAU_3186
Beta-lactamase family protein.
       0.773
Your Current Organism:
Gemmatimonas aurantiaca
NCBI taxonomy Id: 379066
Other names: G. aurantiaca T-27, Gemmatimonas aurantiaca DSM 14586, Gemmatimonas aurantiaca JCM 11422, Gemmatimonas aurantiaca NBRC 100505, Gemmatimonas aurantiaca T-27, Gemmatimonas aurantiaca str. T-27, Gemmatimonas aurantiaca strain T-27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.