STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAU_3219Isochorismatase; Fragment; protein synonym: 2,3 dihydro-2,3 dihydroxybenzoate synthase. (82 aa)    
Predicted Functional Partners:
GAU_3218
seryl-AMP ligase; Protein synonym: serine activating enzyme; Belongs to the ATP-dependent AMP-binding enzyme family.
 
  
 0.998
GAU_3221
2,3-dihydroxybenzoate-AMP ligase.
 
 
 0.998
GAU_3222
Protein synonym: isochorismate mutase.
 
 
 0.996
GAU_3217
2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase.
 
 
 0.975
GAU_3220
Isochorismatase; Fragment; protein synonym: 2,3 dihydro-2,3 dihydroxybenzoate synthase.
 
   
 0.954
GAU_3225
Putative exported protein.
 
    0.954
GAU_3223
Iron ABC transporter substrate-binding protein.
 
    0.919
trpE
Anthranilate synthase component I.
  
  
 0.843
GAU_3216
Phospho-2-dehydro-3-deoxyheptonate aldolase; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).
       0.786
GAU_3636
Putative siderophore-interacting protein.
 
  
 0.782
Your Current Organism:
Gemmatimonas aurantiaca
NCBI taxonomy Id: 379066
Other names: G. aurantiaca T-27, Gemmatimonas aurantiaca DSM 14586, Gemmatimonas aurantiaca JCM 11422, Gemmatimonas aurantiaca NBRC 100505, Gemmatimonas aurantiaca T-27, Gemmatimonas aurantiaca str. T-27, Gemmatimonas aurantiaca strain T-27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.