STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAU_3476Hypothetical protein. (468 aa)    
Predicted Functional Partners:
GAU_3485
Hypothetical protein.
  
     0.652
GAU_2116
Hypothetical protein.
  
     0.631
indO
Protein synonym: IDO; protein synonym: indoleamine-pyrrole 2,3-dioxygenase.
  
     0.576
GAU_0520
Hypothetical protein.
  
     0.573
GAU_3474
Hypothetical protein.
       0.557
GAU_3475
Hypothetical protein.
       0.557
GAU_0787
Hypothetical protein.
  
 
   0.555
GAU_3899
Hypothetical protein.
  
     0.535
GAU_2426
Hypothetical protein.
  
    0.432
GAU_3308
Peptidase M28D family protein.
  
     0.417
Your Current Organism:
Gemmatimonas aurantiaca
NCBI taxonomy Id: 379066
Other names: G. aurantiaca T-27, Gemmatimonas aurantiaca DSM 14586, Gemmatimonas aurantiaca JCM 11422, Gemmatimonas aurantiaca NBRC 100505, Gemmatimonas aurantiaca T-27, Gemmatimonas aurantiaca str. T-27, Gemmatimonas aurantiaca strain T-27
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.