STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAU_3840Sigma factor, ECF-like family protein. (191 aa)    
Predicted Functional Partners:
GAU_3839
Putative serine/threonine protein kinase.
 
 
   0.944
GAU_0070
Putative serine/threonine protein kinase.
  
 
   0.773
GAU_1198
Putative serine/threonine protein kinase.
  
 
   0.753
GAU_3399
Putative serine/threonine protein kinase.
  
 
   0.745
GAU_2969
Putative serine/threonine protein kinase.
  
 
   0.735
GAU_0837
Putative serine/threonine protein kinase.
  
 
   0.732
GAU_3838
Hypothetical protein.
       0.596
GAU_3079
Secretion protein HlyD family protein.
  
     0.563
GAU_3836
Hypothetical protein.
  
    0.535
GAU_3835
Hypothetical protein.
       0.533
Your Current Organism:
Gemmatimonas aurantiaca
NCBI taxonomy Id: 379066
Other names: G. aurantiaca T-27, Gemmatimonas aurantiaca DSM 14586, Gemmatimonas aurantiaca JCM 11422, Gemmatimonas aurantiaca NBRC 100505, Gemmatimonas aurantiaca T-27, Gemmatimonas aurantiaca str. T-27, Gemmatimonas aurantiaca strain T-27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.