Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
comP | devS_2 | MCHLDSM_05339 | MCHLDSM_04501 | Sensor histidine kinase ComP. | Redox sensor histidine kinase response regulator DevS. | 0.410 |
comP | dosT | MCHLDSM_05339 | MCHLDSM_05741 | Sensor histidine kinase ComP. | Hypoxia sensor histidine kinase response regulator DosT. | 0.441 |
comP | liaR_2 | MCHLDSM_05339 | MCHLDSM_00792 | Sensor histidine kinase ComP. | Transcriptional regulatory protein LiaR. | 0.871 |
comP | narX | MCHLDSM_05339 | MCHLDSM_01789 | Sensor histidine kinase ComP. | Nitrate/nitrite sensor protein NarX. | 0.833 |
comP | nreB_1 | MCHLDSM_05339 | MCHLDSM_02576 | Sensor histidine kinase ComP. | Oxygen sensor histidine kinase NreB. | 0.855 |
comP | nreB_2 | MCHLDSM_05339 | MCHLDSM_04468 | Sensor histidine kinase ComP. | Oxygen sensor histidine kinase NreB. | 0.690 |
comP | nreB_3 | MCHLDSM_05339 | MCHLDSM_06379 | Sensor histidine kinase ComP. | Oxygen sensor histidine kinase NreB. | 0.858 |
comP | vraS_1 | MCHLDSM_05339 | MCHLDSM_04828 | Sensor histidine kinase ComP. | Sensor protein VraS. | 0.582 |
comP | vraS_2 | MCHLDSM_05339 | MCHLDSM_05503 | Sensor histidine kinase ComP. | Sensor protein VraS. | 0.732 |
devS_1 | devS_2 | MCHLDSM_01772 | MCHLDSM_04501 | Redox sensor histidine kinase response regulator DevS. | Redox sensor histidine kinase response regulator DevS. | 0.407 |
devS_1 | dosT | MCHLDSM_01772 | MCHLDSM_05741 | Redox sensor histidine kinase response regulator DevS. | Hypoxia sensor histidine kinase response regulator DosT. | 0.437 |
devS_1 | liaR_2 | MCHLDSM_01772 | MCHLDSM_00792 | Redox sensor histidine kinase response regulator DevS. | Transcriptional regulatory protein LiaR. | 0.824 |
devS_1 | narX | MCHLDSM_01772 | MCHLDSM_01789 | Redox sensor histidine kinase response regulator DevS. | Nitrate/nitrite sensor protein NarX. | 0.626 |
devS_1 | nreB_1 | MCHLDSM_01772 | MCHLDSM_02576 | Redox sensor histidine kinase response regulator DevS. | Oxygen sensor histidine kinase NreB. | 0.598 |
devS_1 | nreB_3 | MCHLDSM_01772 | MCHLDSM_06379 | Redox sensor histidine kinase response regulator DevS. | Oxygen sensor histidine kinase NreB. | 0.456 |
devS_1 | vraS_2 | MCHLDSM_01772 | MCHLDSM_05503 | Redox sensor histidine kinase response regulator DevS. | Sensor protein VraS. | 0.613 |
devS_2 | comP | MCHLDSM_04501 | MCHLDSM_05339 | Redox sensor histidine kinase response regulator DevS. | Sensor histidine kinase ComP. | 0.410 |
devS_2 | devS_1 | MCHLDSM_04501 | MCHLDSM_01772 | Redox sensor histidine kinase response regulator DevS. | Redox sensor histidine kinase response regulator DevS. | 0.407 |
devS_2 | dosT | MCHLDSM_04501 | MCHLDSM_05741 | Redox sensor histidine kinase response regulator DevS. | Hypoxia sensor histidine kinase response regulator DosT. | 0.458 |
devS_2 | liaR_2 | MCHLDSM_04501 | MCHLDSM_00792 | Redox sensor histidine kinase response regulator DevS. | Transcriptional regulatory protein LiaR. | 0.837 |
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