STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
neoA2-deoxy-scyllo-inosamine dehydrogenase. (322 aa)    
Predicted Functional Partners:
gutB_3
Sorbitol dehydrogenase.
  
  
  0.933
garL
5-keto-4-deoxy-D-glucarate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
     0.919
gutB_2
Sorbitol dehydrogenase.
  
  
  0.906
KMO78483.1
Cytochrome P450 130.
 
     0.904
gutB_1
Sorbitol dehydrogenase.
  
  
  0.898
KMO78484.1
Hypothetical protein.
       0.887
fruA
PTS system fructose-specific EIIABC component.
  
 
 0.881
por
Polyol:NADP oxidoreductase.
 
  
 0.839
xylA_1
Xylose isomerase; Belongs to the xylose isomerase family.
     
 0.814
kdgK_1
2-dehydro-3-deoxygluconokinase.
 
 
 0.792
Your Current Organism:
Mycolicibacterium chlorophenolicum
NCBI taxonomy Id: 37916
Other names: ATCC 49826, CIP 104189, DSM 43826, HAMBI 2278, IEGM 559, IFO 15527, JCM 7439, M. chlorophenolicum, Mycobacterium chlorophenolicum, Mycobacterium chlorophenolicus, Mycobacterium sp. ATCC 25793, NBRC 15527, NRRL B-16528, Rhodococcus chlorophenolicus, Rhodococcus chlorophenolicus (strain PCP-1), strain PCP-1, strain PCP-I
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