STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacFD-alanyl-D-alanine carboxypeptidase DacF precursor; Belongs to the peptidase S11 family. (274 aa)    
Predicted Functional Partners:
dacB_1
D-alanyl-D-alanine carboxypeptidase DacB precursor; Belongs to the peptidase S11 family.
 
  
 
0.939
vanYB
D-alanyl-D-alanine carboxypeptidase.
     
 0.937
dac
D-alanyl-D-alanine carboxypeptidase precursor.
     
 0.936
dacB_2
D-alanyl-D-alanine carboxypeptidase DacB precursor; Belongs to the peptidase S11 family.
  
  
 
0.883
lytC
N-acetylmuramoyl-L-alanine amidase LytC precursor.
 
 
 0.690
ponA1_2
Penicillin-binding protein 1A.
   
 
 0.689
ponA1_1
Penicillin-binding protein 1A.
  
 
 0.625
KMO67364.1
D-alanyl-D-alanine carboxypeptidase precursor.
     
 0.562
pbpB
Penicillin-binding protein PbpB.
 
 
 0.502
pbpA_1
Penicillin-binding protein A.
 
 
 0.498
Your Current Organism:
Mycolicibacterium chlorophenolicum
NCBI taxonomy Id: 37916
Other names: ATCC 49826, CIP 104189, DSM 43826, HAMBI 2278, IEGM 559, IFO 15527, JCM 7439, M. chlorophenolicum, Mycobacterium chlorophenolicum, Mycobacterium chlorophenolicus, Mycobacterium sp. ATCC 25793, NBRC 15527, NRRL B-16528, Rhodococcus chlorophenolicus, Rhodococcus chlorophenolicus (strain PCP-1), strain PCP-1, strain PCP-I
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.