STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM30738.1Pirin; Pfam:pfam02678 Pirin; Belongs to the pirin family. (461 aa)    
Predicted Functional Partners:
AMM31332.1
NAD-dependent epimerase/dehydratase; Pfam:pfam13460 NADH(P)-binding.
  
  
 0.757
AMM31879.1
NAD-dependent dehydratase; Pfam:pfam13460 NADH(P)-binding.
  
  
 0.757
AMM34087.1
Nucleoside-diphosphate sugar epimerase; Pfam:pfam13460 NADH(P)-binding.
  
  
 0.757
AMM32436.1
Hypothetical protein; Pfam:pfam01370 NAD dependent epimerase/dehydratase family.
  
    0.678
AMM34324.1
Pfam:pfam05532 CsbD-like; Belongs to the UPF0337 (CsbD) family.
 
  
 0.634
AMM34194.1
AraC family transcriptional regulator; Pfam:pfam13278 Putative amidotransferase.
  
  
 0.616
AMM31426.1
Hypothetical protein; Pfam:pfam05532 CsbD-like; Belongs to the UPF0337 (CsbD) family.
  
  
 0.570
AMM32741.1
Pfam:pfam06983 3-demethylubiquinone-9 3-methyltransferase.
 
    0.529
AMM33909.1
Polyisoprenoid-binding protein; Pfam:pfam04264 YceI-like domain; Belongs to the UPF0312 family.
 
  
 0.522
AMM34018.1
Polyisoprenoid-binding protein; Pfam:pfam04264 YceI-like domain; Belongs to the UPF0312 family.
 
  
 0.522
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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