STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM30805.1Pfam:pfam00196 Bacterial regulatory proteins, luxR family. (945 aa)    
Predicted Functional Partners:
AMM30802.1
Benzene 1,2-dioxygenase; Pfam:pfam00866 Ring hydroxylating beta subunit.
 
     0.900
AMM30803.1
Benzoate 1,2-dioxygenase electron transfer component; Pfam:pfam00175 Oxidoreductase NAD-binding domain.
 
   
 0.895
AMM30804.1
Pfam:pfam00106 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.862
AMM30801.1
Benzoate 1,2-dioxygenase subunit alpha; Pfam:pfam00355 Rieske [2Fe-2S] domain.
 
     0.859
AMM30808.1
Pfam:pfam02426 Muconolactone delta-isomerase.
 
     0.843
AMM30807.1
L-Ala-D/L-Glu epimerase; Pfam:pfam02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain.
 
   0.835
AMM30800.1
Catechol 1,2-dioxygenase; Pfam:pfam00775 Dioxygenase.
 
     0.802
AMM30806.1
LysR family transcriptional regulator; Pfam:pfam03466 LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family.
 
    0.671
AMM33942.1
Metal-dependent phosphohydrolase; Pfam:pfam13487 HD domain.
 
 
 0.499
AMM31287.1
Hypothetical protein; Pfam:pfam01590 GAF domain.
  
 
 0.497
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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