Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AMM30811.1Pfam:pfam00106 short chain dehydrogenase. (338 aa)    
Predicted Functional Partners:
AMM30813.1
Pfam:pfam00723 Glycosyl hydrolases family 15.
     0.912
AMM30810.1
Hypothetical protein.
       0.819
AMM31365.1
Mandelate racemase; Pfam:pfam13378 Enolase C-terminal domain-like; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.784
AMM31368.1
Hypothetical protein; Pfam:pfam13618 Gluconate 2-dehydrogenase subunit 3.
 
     0.733
AMM31366.1
Thiamine pyrophosphate-binding protein; Pfam:pfam02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Belongs to the TPP enzyme family.
 
     0.722
AMM31367.1
Pfam:pfam05199 GMC oxidoreductase.
 
   
 0.657
AMM30812.1
Pfam:pfam01263 Aldose 1-epimerase.
       0.581
AMM33286.1
Hypothetical protein; Pfam:pfam13231 Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.419
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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