STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM30818.1Membrane protein. (293 aa)    
Predicted Functional Partners:
AMM30817.1
Cholesterol dehydrogenase; Pfam:pfam05368 NmrA-like family.
 
     0.830
AMM30821.1
Phytoene desaturase; Pfam:pfam01593 Flavin containing amine oxidoreductase.
 
     0.816
AMM30820.1
Pfam:pfam00494 Squalene/phytoene synthase.
 
     0.810
AMM30822.1
Lycopene cyclase.
 
     0.808
AMM30816.1
Membrane protein; Pfam:pfam03176 MMPL family.
     
 0.782
AMM30824.1
Prenyltransferase; Pfam:pfam01040 UbiA prenyltransferase family.
 
     0.775
AMM30823.1
Hypothetical protein.
 
     0.774
AMM30826.1
Pfam:pfam12802 MarR family.
 
     0.638
AMM30825.1
Pfam:pfam03441 FAD binding domain of DNA photolyase.
       0.610
AMM30819.1
Trans-hexaprenyltranstransferase; Pfam:pfam00348 Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
     0.606
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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