Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMM30983.1Pfam:pfam11774 Lsr2. (112 aa)    
Predicted Functional Partners:
lysS
Lysine--tRNA ligase; Pfam:pfam00152 tRNA synthetases class II (D, K and N); Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.627
AMM30982.1
Hypothetical protein.
       0.627
AMM33047.1
Pfam:pfam11343 Protein of unknown function (DUF3145).
  
     0.601
AMM32126.1
Pfam:pfam12005 Protein of unknown function (DUF3499).
  
     0.589
AMM33394.1
Hypothetical protein.
  
     0.542
AMM33040.1
Pfam:pfam11253 Protein of unknown function (DUF3052).
  
     0.521
AMM34203.1
Integration host factor; Pfam:pfam00216 Bacterial DNA-binding protein; Belongs to the bacterial histone-like protein family.
      
 0.485
AMM32809.1
Putative integration host factor.
  
   
 0.477
AMM33310.1
Hypothetical protein.
  
     0.467
AMM33908.1
Phosphoglycerate mutase family protein; Pfam:pfam00300 Histidine phosphatase superfamily (branch 1).
  
     0.442
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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