STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM31030.1HNH endonuclease; Pfam:pfam02720 Domain of unknown function (DUF222). (499 aa)    
Predicted Functional Partners:
AMM31836.1
Iron-sulfur cluster assembly protein HesB; Pfam:pfam00730 HhH-GPD superfamily base excision DNA repair protein.
  
     0.654
AMM33769.1
Hypothetical protein.
  
   
 0.592
AMM31031.1
Phosphoglycerate dehydrogenase-like oxidoreductase; Pfam:pfam02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain.
       0.541
AMM33770.1
DNA-directed DNA polymerase; Pfam:pfam00817 impB/mucB/samB family.
 
    0.509
AMM32737.1
Hypothetical protein; Pfam:pfam10041 Uncharacterized conserved protein (DUF2277).
  
     0.478
dnaE2
DNA polymerase III subunit alpha; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.
 
  
 0.436
AMM31032.1
Pentapeptide repeat protein.
     
 0.433
AMM32231.1
Protein EssC; Pfam:pfam01580 FtsK/SpoIIIE family.
 
  
 0.432
AMM31046.1
Pfam:pfam04286 Protein of unknown function (DUF445).
 
     0.422
AMM32177.1
Hypothetical protein.
  
     0.417
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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