STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM31054.1O-methyltransferase, family 3; Pfam:pfam01596 O-methyltransferase. (220 aa)    
Predicted Functional Partners:
pgl
6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.
      0.906
AMM31056.1
Putative spermidine synthase; Pfam:pfam13659 Methyltransferase domain.
  
    0.809
AMM31055.1
Pfam:pfam00583 Acetyltransferase (GNAT) family.
  
    0.784
AMM31053.1
Hypothetical protein; Pfam:pfam01910 Domain of unknown function DUF77.
       0.616
AMM31642.1
Hypothetical protein; Pfam:pfam01136 Peptidase family U32.
  
  
 0.551
AMM31052.1
Pfam:pfam00440 Bacterial regulatory proteins, tetR family.
       0.434
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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