STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM31171.1FAD-binding protein; Pfam:pfam04030 D-arabinono-1,4-lactone oxidase. (422 aa)    
Predicted Functional Partners:
xylA
Pfam:pfam01261 Xylose isomerase-like TIM barrel; Belongs to the xylose isomerase family.
 
  
  0.976
AMM33023.1
Beta-galactosidase; Pfam:pfam02836 Glycosyl hydrolases family 2, TIM barrel domain.
    
  0.809
AMM31021.1
Glucokinase; Pfam:pfam00480 ROK family.
    
  0.801
AMM31661.1
Hypothetical protein; Pfam:pfam00480 ROK family.
    
  0.801
AMM32465.1
Glucokinase; Pfam:pfam00480 ROK family.
    
  0.801
AMM31169.1
Xylulokinase; Pfam:pfam00370 FGGY family of carbohydrate kinases, N-terminal domain; Belongs to the FGGY kinase family.
 
   
 0.765
AMM31170.1
Pfam:pfam01370 NAD dependent epimerase/dehydratase family.
  
  
 0.709
AMM33326.1
Pfam:pfam00766 Electron transfer flavoprotein FAD-binding domain.
  
 
 0.509
AMM33327.1
Pfam:pfam01012 Electron transfer flavoprotein domain.
  
 
 0.509
AMM31167.1
MarR family transcriptional regulator; Pfam:pfam00480 ROK family.
       0.492
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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