STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
AMM31248.1Putative transcriptional regulator; Pfam:pfam12844 Helix-turn-helix domain. (511 aa)    
Predicted Functional Partners:
AMM31247.1
Pfam:pfam00463 Isocitrate lyase family.
 
   
 0.874
AMM33190.1
Pfam:pfam12695 Alpha/beta hydrolase family.
  
     0.680
AMM32431.1
2-methylcitrate dehydratase; Pfam:pfam03972 MmgE/PrpD family.
  
  
 0.669
AMM31246.1
Pfam:pfam01274 Malate synthase; Belongs to the malate synthase family.
 
   
 0.601
AMM32699.1
Hypothetical protein.
  
     0.551
pckG
Phosphoenolpyruvate carboxykinase [GTP]; Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle; Belongs to the phosphoenolpyruvate carboxykinase [GTP] family.
     
 0.549
AMM31249.1
Integrase, catalytic region; Pfam:pfam13683 Integrase core domain.
       0.504
AMM32334.1
Membrane protein.
  
     0.454
AMM32466.1
Hypothetical protein.
  
     0.433
glcB
Malate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
     
 0.427
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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