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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
tadACytidine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (149 aa)    
Predicted Functional Partners:
AMM34003.1
Pfam:pfam02595 Glycerate kinase family; Belongs to the glycerate kinase type-1 family.
 
 
    0.849
AMM30948.1
Pfam:pfam02595 Glycerate kinase family; Belongs to the glycerate kinase type-1 family.
 
 
    0.828
ung
uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
 
 
 0.776
AMM30788.1
Pfam:pfam13350 Tyrosine phosphatase family.
      0.681
ispE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
  
 0.659
AMM31297.1
DNA-3-methyladenine glycosylase ii; Pfam:pfam00730 HhH-GPD superfamily base excision DNA repair protein.
  
  
 0.618
AMM31298.1
Pfam:pfam03352 Methyladenine glycosylase.
     
 0.610
AMM31300.1
Cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.
  
  
 0.602
AMM33434.1
2-nitropropane dioxygenase NPD; Pfam:pfam03060 Nitronate monooxygenase.
 
 
    0.601
AMM31301.1
RNA polymerase sigma factor, sigma-70 family; Pfam:pfam04542 Sigma-70 region 2; Belongs to the sigma-70 factor family.
     
 0.595
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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