Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMM31397.1Hypothetical protein. (161 aa)    
Predicted Functional Partners:
AMM31395.1
Hypothetical protein.
 
  
 0.961
AMM31396.1
Hypothetical protein.
       0.803
AMM33985.1
XRE family transcriptional regulator; Pfam:pfam01381 Helix-turn-helix.
 
  
 0.609
AMM32221.1
Membrane protein; Pfam:pfam03703 Bacterial PH domain.
 
     0.544
AMM31398.1
Hypothetical protein.
       0.537
AMM33132.1
Pfam:pfam04138 GtrA-like protein.
  
     0.494
AMM34372.1
Phosphatidic acid phosphatase.
 
     0.478
AMM34136.1
Hypothetical protein.
  
     0.468
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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