STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMM31492.1Integrase; Pfam:pfam00589 Phage integrase family; Belongs to the 'phage' integrase family. (370 aa)    
Predicted Functional Partners:
AMM31493.1
XRE family transcriptional regulator; Pfam:pfam13443 Cro/C1-type HTH DNA-binding domain.
 
   
 0.951
AMM31494.1
Hypothetical protein.
 
   
 0.950
AMM34456.1
Cro/Cl family transcriptional regulator; Pfam:pfam13443 Cro/C1-type HTH DNA-binding domain.
 
   
 0.795
AMM34457.1
Recombinase XerD.
 
   
 0.786
AMM31017.1
Hypothetical protein; Pfam:pfam00589 Phage integrase family.
 
   
 0.756
AMM32449.1
Pfam:pfam02153 Prephenate dehydrogenase.
  
    0.526
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
  
  
 0.522
AMM33305.1
Phosphoribosyltransferase; Pfam:pfam00156 Phosphoribosyl transferase domain.
  
    0.516
whiA
Putative sporulation transcription regulator WhiA; Involved in cell division and chromosome segregation.
   
    0.491
AMM32873.1
Hypothetical protein; Pfam:pfam02586 Uncharacterized ACR, COG2135; Belongs to the SOS response-associated peptidase family.
   
    0.491
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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