Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMM31500.1Hypothetical protein. (50 aa)    
Predicted Functional Partners:
AMM31501.1
Hypothetical protein; Pfam:pfam00497 Bacterial extracellular solute-binding proteins, family 3.
       0.428
AMM31499.1
DNA polymerase; Pfam:pfam13438 Domain of unknown function (DUF4113).
       0.415
AMM31502.1
Polar amino acid ABC transporter, inner membrane subunit; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
       0.411
AMM31503.1
Pfam:pfam00005 ABC transporter.
       0.411
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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