STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM31598.1LacI family transcriptional regulator; Pfam:pfam13377 Periplasmic binding protein-like domain. (349 aa)    
Predicted Functional Partners:
AMM32601.1
Glutamate synthase; Pfam:pfam01645 Conserved region in glutamate synthase.
    
 
 0.706
AMM31597.1
Short-chain dehydrogenase; Pfam:pfam13561 Enoyl-(Acyl carrier protein) reductase.
 
   0.581
AMM31596.1
Pfam:pfam05853 Prokaryotic protein of unknown function (DUF849).
 
     0.520
AMM31039.1
HPr family phosphocarrier protein; Pfam:pfam00381 PTS HPr component phosphorylation site.
   
 
 0.474
AMM31041.1
PTS lactose transporter subunit IIC; Pfam:pfam00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2.
     
 0.408
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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