STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM31649.1Hypothetical protein; Pfam:pfam13407 Periplasmic binding protein domain. (335 aa)    
Predicted Functional Partners:
AMM31650.1
Arabinose import ATP-binding protein AraG; Pfam:pfam00005 ABC transporter.
 
 0.985
AMM31651.1
Pfam:pfam02653 Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.961
AMM30853.1
Inner-membrane translocator; Pfam:pfam02653 Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.872
AMM30851.1
Inner-membrane translocator; Pfam:pfam02653 Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.868
AMM32184.1
ABC transporter permease; Pfam:pfam02653 Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.846
AMM30839.1
Pfam:pfam00005 ABC transporter.
 
 
 0.780
AMM30852.1
Ribose ABC transport system, ATP-binding protein RbsA; Pfam:pfam00005 ABC transporter.
 
 
 0.746
AMM32183.1
Sugar ABC transporter ATP-binding protein; Pfam:pfam00005 ABC transporter.
 
 
 0.744
AMM31652.1
Pfam:pfam00106 short chain dehydrogenase.
 
     0.739
AMM31648.1
Oxidoreductase domain protein; Pfam:pfam01408 Oxidoreductase family, NAD-binding Rossmann fold.
  
  
 0.737
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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